Textbook of Microbiology for Paramedicals Logeswari Selvaraj
INDEX
A
Aberration 7
Ablert’s stain 95
ABO blood group system 105
Absidia 420, 439
Acetone 80
Acid-alcohol reagent 95
Acid-fast staining 228
Acid-fast stains 81, 92
Actinomyces 245, 395
Actinomycetes 243
Acute necrotising encephalitis 297
Acute schistosomiasis 366
Adenovirus 279, 291
Aflatoxins 424
Agglutination 108
Agglutination tests 116
brucellosis 119
cerebrospinal fluid 124
febrile illnesses 116
M.pneumoniae infection 120
serum 123
Albert’s stain 83
Alcohols 21
Aldehyde test 348
Aldehydes 21
Alkali-glycerine solution 398
Alkaline bile salt agar 205
Alkaline nutrient agar 27
Alkaline peptone water 27
Allyamines 421
Amastigote 345
Amatoxins 423
Amidase tests 221
Amoebic liver abscess 329
Ancylostoma duodenale 371, 388
Andrade’s indicator 53
Animal inoculation 256
Animal pathogenicity tests 436
Antibiotic disc 97
Antigen or nucleic acids 242
Antigen-antibody reactions 103
Antimony test 348
Antistreptolysin O (ASO) test 126
Antiviral agents acyclovir 319
amantadine 319
azidothymidine 321
famciclovir 319
fomivirsen 321
ganciclovir 321
idoxuridine 319
interferons 321
lamivudine 321
oseltamivir 319
penciclovir 319
ribavirin 321
rimantadine 319
stavudine 321
trifluorothymidine 319
valacyclovir 319
zanamivir 319
Arboviruses 265
Arylsulphatase test 221
Ascaris lumbricoides 369, 388
Ascospore stain 87
Aseptic meningitis 283, 287, 303
Aspergillus fumigatus 417
Astroviruses 291
Auramine stain 81
Autoimmunity 105
Azoles 421
B
Bacillus anthracis 170
Bacteria 11
growth and multiplication 14
growth curve 14
metabolism 15
oxygen requirement 15
shape 11
size 11
Bacteriological index 229
Balantidium coli 335
Balck fly 446
Beta-propiolactone 22
Bile broth 34
Bile solubility test 71
Biochemical methods 452
Biopsy urease test 210
Biphasic MacConkey’s medium 32
Bipolar staining 84
Bismuth sulfite agar 33
Blastomyces dermatitidis 416
Blind passage 258
Blood agar 28, 29
Blood culture 196
Blood flukes 366
Brain heart infusion agar 34
Brain heart infusion broth 34
Bugs 444
Bunyaviridae 293
Burkitt’s lymphoma 302
C
C.diphtheriae 165
Calcivirus 291
Camp test 154
Candida
albicans 412
glabrata 394
Candidiasis 434
Capsid 254
Capsomers 254
Capsule stain 85
Carbohydrate
fermentation media 52, 69
solution 54
utilisation (assimilation) test 404
Carboxylase test medium 35
Cary-Blair medium 203
Casoni test 361
Caspofungin 421
Castaneda medium 35
Catalase-peroxidase tests 221
Cell culture 258, 260
Cell wall 12
Cestodes 354
Chikungunya 295
Chlamydiae 247
Chloral lactophenol mounting 430
Chloroquine 352
Chocolate agar 29
VCN and isovitalex 30
Christensen’s urea agar 74
Chromatic 7
Chromoblastomycosis 409
Chronic viral neurological diseases 283
Circulating antigen 200
Citrate utilization test 71
Classification of viruses 254, 293
CLED agar 460
Clostridium tetani 173
Clot culture 197
Clumping factor test 70
Coagglutination 453
Coagulase tube test 71
Coagulase-negative staphylococci 146
Coccidioides immitis 415
Cold stain 94
Complement 107
Complement fixation 110
Complement fixation test 269, 297, 348
Concentration procedure 380
flotation method 381
sedimentation method 380
Conjunctivitis 297
Conventional cell culture 271
Coracidium 358
Cornmeal agar 54, 403
Corona viruses 281
Cotton plugs 58
Counterimmunoelectrophoresis 112, 217
Coxsackieviruses 287
Cranial zoster 299
C-reactive protein test 132
Creutzfeldt-Jakob disease 283, 311
Croup 277
Cryptococcosis 435
Cryptococcus neoformans 411
Cryptosporidium species 334
Crystal violet 80
blood agar 54
Cultural procedures 430
Culture media 24, 58, 401
complex media 25
enriched media 25
anaerobic 26
differential 26
indicator 26
selective 26
sugar 26
transport 26
simple media 25
synthetic or defined media 25
types 24
culture plates 59
preparation of agar slant 59
procedure 58
Culture methods 60, 61
anaerobic 62, 65
alkaline-pyrogallol method 66
brewer anaerobic jar method 67
candle jar technique 65
thioglycollate broth method 65
making of wire loops for inoculation 63
Culture techniques 451
Cystine lactose electrolyte-deficient 459
Cytomegalic inclusion disease 300
Cytomegalovirus 265, 299
Cytopathic effect 258
Cytoplasm 12
Cytoplasmic membrane 12
D
Decarboxylase test 78
Dengue 294
Deoxycholate citrate agar 31
Deoxyribonuclease (DNase) test agar 30
Dermatomycosis 405
Diarrhoea 178, 181
Dilute carbol fuchsin 80
Dimorphic mycotic agents 394
Dimorphic organisms 414
Diphyllobothrium latum 357
Dipsticks comb immunoassays 454
Direct immunofluorescence 453
Direct slide agglutination 452
DNA probes 375
Dog tapeworm 359
Dracunculus medinensis 375
Dry heat 18
Dry mount technique 90
Dyes 22
Dysentery enteric cholera (DEC) medium 36
E
Ebstein-Barr virus 301
Echinococcus granulosus 359
Echo virus 287
Egg yolk agar 36
Electron microscopy 267
Elek plate test 169
Elek’s gel precipitation test 168
Elementary body 247
Embryonated eggs 256
EMJU medium for leptospira 36
Encephalitis 283, 304
Endemic infection 280
Entamoeba coli 329
Entamoeba histolytica 325, 385
Enteric fever 192, 195
Enterobius vermicularis 371, 388
Enteroviruses 265, 282
Envelope 254
Enzyme immunoassays (EIA) to detect antigen 453
Epidemic infection 280
Epidemic keratoconjunctivitis 281
Epidermophyton 407
Epstein-Barr virus 265
Escherichia coli 177
Esculin broth 37
Esculing hydrolysis 77
Ethylene oxide 22
Extraintestinal amoebiasis 326
F
Faecal adenoviruses 281
Faeces culture 197
Fasciolopsis hepatica 364
Filamentous bacteria 394
Filtration 20
Fimbriae 14
Flagella 13
Flaviviruses 293
Flocculation 108
Flocculation tests 234
Flucytosine 421
Fluorescent antibody technique 111
Fontana’s stain 85
Formaldehyde gas 22
Frei’s test 250
G
Gabbet’s stain 82
Gamma herpes virus 301
Gastroenteritis 192, 195
Gastroenteritis
viruses 266
Gelatin medium 54
Gelatinase test 77
Genital herpes 297
Genome 253
Geotrichum candidum 413
Germ tube test 404, 413
Giardia intestinatis (lamblia) 329
Giardia lamblia 386
Giemsa stain 88
Gingivostomatitis 297
Glucose phosphate broth 37
Glutaraldehyde 21
Gram staining 91
Gram’s iodine 80
Gram’s stain 80, 430
Greiss test 458
Griseofulvin 422
Gross macroscopic examination 377
Guinea worm 375
H
H.influenzae 214
Haemagglutination-inhibition test 109, 270, 275
Haemolytic streptococci 153
Halogens 22
Hand-foot-and-mouth-disease 287
Hanging drop 90
Helicobacter pylori 208
Hepatitis 300
hepatitis A 307
hepatitis C 309
hepatitis viruses 265
Herpangina 287
Herpes simplex virus 265, 296
Herpetic whitlow 297
Histoplasma capsulatum 414
Hot air oven 18
Human diploid cell vaccine 317
Human herpes virus-6 302
Human immunodeficiency virus 265
Human mycetismus 423
Hydrogen sulfide production 77
Hypersensitivity reactions 104
I
Immunodeficiency disease 104
Immunoelectrophoresis 112
Immunofluorescence 270
Immunohematology 105
Immunologic test for pregnancy 131
Immunological (antigen) test 452
Incineration 18
Incubation 98
India ink 85, 399
Indole test 76
Infections associated with aids 314
Infectious mononucleosis (glandular fever) 300, 301
Influenza 274
Influenza A and B viruses 266
Inoculation 97, 98
Intestinal amoebiasis 326
Intestinal flukes 362
Intestinal worms 369
Intracytoplasmic inclusions 13
Iron haematoxylin stain 383
Isospora belli 334
K
Kala azar 345
Kaposi varicelliform eruption 297
Keratitis 297
Ketayama fever 366
Kinyoun acid-fast staining 82
Kinyoun method 94
Kinyoun’s carbol-fuchsin stain 95
Kirchner’s medium 37
Klebsiella 183
Koch’s postulates 4
Kuru 311
Kyasanur forest fever 294
L
Laboratory investigation 455
ascitic fluid 472
blood 484
cerebrospinal fluid 482
faeces 478
hydrocoele fluid 472
pus, ulcer material and skin specimens 466
sputum 461
throat and mouth swabs 464
urine 455
urogenital specimens 475
Laboratory methods in virology 261
direct detection methods 267
identification of viruses 272
specimen processing 263
based on requests for specific viruses 265
general principles 263
processing based on specimen type 264
specimen selection and collection 261
specimen: transport and storage 263
virus isolation 271
Lactophenol cotton blue 399
Lactophenol cotton blue mounting medium 86
Latex agglutination 216, 453
Latex agglutination slide test 134
Leeches 443
Leishmania 345
Leptospira interrogans 237
Leucocyte esterase 459
Lice 443
Liver cysts 359
Loeffler’s methylene blue 79
Löeffler’s serum medium 38, 55
Löwenstein-Jensen medium 38
with antibiotics 39
antibiotic stock solution 39
cycloserine 43
ethionamide 42
rifampicin 42
streptomycin 40
thiacetazone 40, 41
Lugol’s iodine 88
M
MacConkey agar 28
Maduromycosis 408
Malarial parasites 348
Mannitol motility medium 31
Mannitol motility test 72
Mannitol salt agar 31
Mantoux test 223
McFadyean’s reaction 170
Measles 304
Meningitis 224
Mesosomes 13
Metacercariae 364, 366
Metachromatic granules 83
Methyl red (MR) test 72
Methyl red indicator for MR test 44
Microbiology 3
Microfilaria 373
detection 374
Microscopic examination 378
Microscopy 5
binocular 6
darkground microscope 8
fluorescence microscopy 9
magnification 6
method of using light microscope 7
monocular 5
Microsporum 406
Midstream urine specimen 179
Modified acid-fast stained 83
Moist heat 18
Monsur’s gelatin taurocholate trypticase tellurite agar 205
Monsur’s taurocholate tellurite peptone water 204
Monsur’s tellurite taurocholate gelatin agar 56
Mosquitoes 444
Moulds 393
Mounting fluid 86
Mucor 420, 439
Mueller-Hinton agar 32
Mueller-Hinton haemoglobin agar 32
Mumps 303
Mycetomas 409, 432
Mycobacterium leprae 227
Mycobacterium tuberculosis 219
Mycology 393
Mycoplasmas 240
Mycoses by dimorphic fungi 437
Myocarditis pericarditis 287
N
Naegleria fowleri 338
Nagler’s medium 36
Necator americanus 371, 388
Negler reaction 176
Negri bodies 317
Neisseria meningitides 159
Nematodes 372
Neonatal infection 297
Neuraminidase 275
Neutral red test 221
Neutralisation 270
Niacin test 221
Nitrate reduction test 72, 221
Nocardia 245, 395
Non-gonococcal urethritis 163
Non-treponemal tests 122
Norwalk virus 292
Novy-Macneal-Nicolle (NMN) medium 56
Nucleus 13
Numerical aperture 7
Nutrient agar 28
Nutrient broth 27
O
O’nyong-nyong 295
Ophthalmia neonatorum 162
Opportunistic fungi 394, 416
Oxidase test 70
Oxidation fermentation (OF) medium 44, 73, 147
P
Paediatric respiratory viruses 266
Parainfluenza viruses 276
Paralysis (poliomyelitis) 283
Paratyphoid fever 195
Paul-Bunnell test 121, 301
Peptone water 27, 212
Petroff’s method 225
pH adjustment 57
Phallotoxins 423
Phenols 22
Phenyl pyruvic acid (PPA) test 73
Phlebotomus sandflies 445
Phycomycosis 438
Plasmodium 350
Pleurodynia 287
Pneumococci 156
bile solubility test 157
biochemical reaction 157
culture 156
morphology 156
Poliovirus 285
Polychrome methylene blue 79
Polyenes 421
Polymerase chain reaction 249, 265
Ponder’s stain 84
Post-infectious encephalomyelitis 283, 304
Potassium iodide 422
Potato dextrose agar 56, 403
Precipiation 108
Principles of antigen tests 452
Processing of specimens 384
Progressive multifocal leucoencephalopathy 310
Progressive multifocal neuroencephalopathy 283
Promastigote 346
Proteus mirabilis 185, 186
Pseudomonas aeruginosa 211
Pulmonary tuberculosis 224
Pus of liver abscess 326
Pyogenic infections 179, 182
Q
Quantitative buffy coat test 351
R
Rabies 316
Racquet hyphae 426
Radial immune haemolysis 270
Radial immunodiffusion 112
Radiation 20
Radioimmunoassay (RIA) 269
Ramsay-Hunt syndrome 299
Rapid plasma reagin 235
Renal tuberculosis 224
Reporting of stool examination 382
Resistance ration method 98
Resolution 7
Respiratory syncytial virus 277
Reticulate (initial) body 247
Retroviruses 313
Reynold-Braude phenomenon 435
Rh blood group system 105
Rheumatoid arthritis test 134
Rhinoviruses 278
Rhizopus 419, 439
Ribosomes 12
Rice grain medium 57
Robertson’s cooked meat medium 50
Rotavirus 289
Rubella 305
S
Sabouraud dextrose agar 51, 402
Sabouraud dextrose broth 51, 402
Saline and lodine 379
Salmonella 192
Salmonella-Shigella (SS) agar 45, 188
Sarcoptes scabiei 445
Satellitism 214
Scarlet fever 151
Schaudin’s fixative 87
Schistosoma Haematobium 384
Selenite-F-enrichment broth 46
Septicaemia 179, 182, 192, 195
Serodiagnosis 107
principles 108
Serodiagnostic tests 130
acquired immunodeficiency syndrome 130
rubella 130
toxoplasmosis 130
Serum telluite agar 46
Shell vial culture 272
Shigellae 188
Simmon’s citrate agar 46
Simple staining 90
Slide agglutination test 191
Slide culture technique 428
Sodium azide broth 47
Specimen collection 395
cerebrospinal fluid 396
pus and exudates 396
skin scrapings, nails, and hair 395
sputum 396
Spherical aberration 7
Spirochaetes 231
Sporothrix schenckii 408
Stain for Pneumocystis carinii 85
Staphylococci 139
bacteriophage typing 146
biochemical reactions 141, 142
catalase test 143
coagulase test 143
deoxyribonuclease test 145
morphology 139
pathogenesis 141
phosphatase test 145
tellurite reduction 146
treatment 146
tube test 144
Sterilisation 17
Sterilization control 18
Streptococcus faecalis broth test 75
Streptococcus pyogenes biochemical reactions 149
laboratory diagnosis 152
non-suppurative complications 152
Streptozyme test 129
String test 76
Structure of viruses 253
Subacute sclerosing panencephalitis 283, 304
Subculture 431
Sulfation reagent 86
Suramin 341
Syphilis 232
T
T.saginata and T.solium 356
Testing serum for antibodies 454
Thioglycollate broth 44
Thiosulphate cirate bile sucrose (TCBS) agar 205
Ticks 447
Tissue culture 258, 271
Titration 57
Todd-Hewitt broth 47
Togaviruses 293
Tolnaftate 422
Toxoplasma gondii 352
Trematodes 362
Treponema pallidum 231
Treponemal tests 122, 125
Trichomonas vaginalis 332, 336
Trichophyton 405
Trichrome stain 88, 382
Trichuris 371
Triple sugar iron (TSI) agar 47
Trophozoite 330, 386
Trypanosoma brucei 340
Trypanosoma cruzi 342
Trypticase soy broth 48
Tsetse fly 446
Tuberculin test 222
Tumourogenic mycotoxins 424
Tween 80 hydrolysis 222
Typhoid fever 195
Typhoid vaccine 201
U
Urea agar 48
Urea broth for mycobacteria 49
Ureas test 404
Urinary tract infection 178
Urine culture 197
Urogenital swab 384
V
V.cholerae 202
Varicella-zoster virus 266, 298
Venereal disease research laboratory (VDRL) test 123
Venkatraman-Ramakrishnan (VR) medium 203
Viral serology 267
Viridans streptococci 155
Virion 254
Virulence test 168
Virus haemagglutinin 275
Voges-Proskauer (VP) test 75
Voriconazole 421
W
Warts 312
Weil’s disease 238
Weil-Felix test 118
Wet mount 378, 397, 398
preparation 427
technique 89
Widal test 116, 198
Willis and Hobbs medium 50
Wilson and Blair medium 33
Wood’s lamp examination 429
Wuchereria bancrofti 372
X
Xylose lysine desoxycholate agar 50
Y
Yeast nitrogen base 53
Yeast-like fungi 394
Yeast-like organisms 412
Yeasts 393, 411
Yellow fever 294
Z
Ziehl-Neelsen stain 81
Ziehl-Neelsen method 93
Ziehl-Neelsen smear 462
Zygomycosis 419, 438
×
Chapter Notes

Save Clear


1GENERAL MICROBIOLOGY2

Introduction to MicrobiologyChapter 1

Microbiology deals with the study of microscopic organisms. The diagnostic microbiology laboratory involves in the identification of infectious agents.
The procedures involved in the microbiological analysis varies from one branch to another. For example, examination of parasites are totally different from the routine diagnostic procedures employed in bacteriology and virology.
Identification of the infectious agent is the principle function of the diagnostic microbiology laboratory, moreover, the diagnostic laboratory also provides guidance in therapeutic management.
For example, in case of bacterial infections the laboratory provides information regarding the most effective antimicrobial agent and its dosage to be used for the particular patient.
 
HISTORY OF MICROBIOLOGY
As microbes are invisible to the unaided eye, definitive knowledge about them had to await the development of microscopes. The credit for having first observed and reported bacteria belongs to Antony van Leeuwenhoek, whose hobby was grinding lenses and observing diverse materials through them. Leeuwenhoek coined the word of ‘little animalcules’ as he called them, represented only curiosity of nature.
The development of microbiology as a scientific discipline dates back to Louis Pasteur (1822-95). Though trained as a chemist, his studies on fermentation led him to take an interest in microoganisms. The basic principles and techniques of microbiology were evolved by Pasteur during his enquiry into the origin of microbes, he introduced techniques of sterilisation and developed the steam steriliser, hot-air oven and autoclave. He also established the differing growth needs of different bacteria.
He attenuated cultures of the anthrax bacillus by incubation at high temperature (42-43°C) and proved that inoculation of such cultures in animals induced specific protection against anthrax. It was Pasteur who coined the term vaccine for prophylactic preparations to commemorate the first of such 4preparations, namely cowpox, employed by Jenner for protection against smallpox.
Pasteur and Koch had many disciples who discovered the causative agents of several bacterial infections. In 1874 Hansen described the leprosy bacillus; in 1879 Neisser described the Gonococcus; in 1881 Ogston discovered the Staphylococcus; in 1884 Loeffler observed the tetanus bacillus in soil; in 1886 Frenkel described the Pneumococcus; in 1887 Bruce identified the causative agent of Malta fever; in 1905 Schaudinn and Hoffmann discovered the spirochaete of syphilis.
Roux and Yersin (1888) identified a new mechanism of pathogenesis when they discovered the diphtheria toxin. Similar toxins were identified in tetanus and some other bacteria. The toxins were found to be specifically neutralised by these antitoxins.
The causative agents of various infectious disease were being reported by different investigators in such profusion that it was necessary to introduce criteria for proving. These criteria, first indicated by Henle, were enunciated by Koch and are known as “Koch's postulates”.
  1. The bacterium should be constantly associated with the lesions of the disease.
  2. It should be possible to isolate the bacterium in pure culture from the lesions.
  3. Inoculation of such pure culture into suitable laboratory animal should reproduce the lesions of the disease.
  4. It should be possible to reisolate the bacterium in pure culture from the lesions produced in the experimental animals.
  5. The specific antibodies to the bacterium should be demonstrable in the serum of patient suffering from the disease.
The next major discovery in immunity was Pasteur's development of vaccines for chicken-cholera, anthrax and rabies. Pfeiffer (1893) demonstrated bactericidal effect in vivo by injecting live cholera vibrios intraperitoneally in guinea pigs previously injected with killed vibrios. The vibrios were shown to undergo lysis.
Apart from the obvious benefits such as specific methods of diagnosis, prevention and control of infectious disease, medical microbiology has contributed to scientific knowledge and human welfare in many other ways.