Biochemistry for Physiotheraphy and Allied Health Sciences Students Beena V Shetty, Nandini M, Vinitha Ramanath Pai
INDEX
A
α-amylase 24
Absorbance 335
Absorption, carbohydrates 25
cholesterol 72
folic acid 226
vit A 198
vitamin B12 223
Acetic acid 63
Acetylcholine 272, 274
Acetoacetate 91, 151
Acetone 91
Acetyl CoA 34, 35
Acetyl CoA carboxylase 97
Acid phosphatase 316
Acid-base homeostasis 289
Acidosis 252, 298
Aconitase 37
Actin 5, 126, 303
Action, chymotrypsin
Activation energy 174
Active centre, enzyme 51
Active transport 26, 139
Addison’s disease 272
Adenine 155
Adenosine 157
Adenosine triphoshate (ATP) 3, 38
Adenylate cyclase 53
Adipose tissue 99
Adrenaline 275, 306
Adrenocorticotropic hormone 101
Alanine 116
Alanine aminotransferase 143
Albumin 125
Aldolase 30
Aldonic acid 30
Aldosterone 71, 113
Aliphatic amino acids 116
Alkaline phosphatase 194, 325
Alkalosis 298
Allopurinol 186
Allosteric enzymes 187
Allosteric inhibition 187
All-trans retinal 199
Alpha helix structure 130
Alpha ketoglutarate 145
Alpha tocopherol 208
Alport syndrome 310
Amino transferase 143
Aminopterin 184, 229
Ammonia 146
Amphibolic pathway 39
Ampholytes 122
Amylopectin 20
Amylopectinosis 56
Amylose 19
Amylo 1, 4
transglucosidase 49
Anaplerosis 39
Anderson’s disease 56
Androgens 113, 263
Anomerism 11
Antidiuretic hormone 271, 282
Anti cancer drugs 229
Anticodon arm 164
Antioxidants 61, 209
Antiport 43
Apoferritin 245
Arachidonic acid 64
Arylsulfatase
Arthritis 5
Arginine 118
Argininosuccinate 148
Argininosuccinate lyase 148
Argininosuccinate synthetase 148
Aromatic amino acids 116
Aromatic hydrocarbons 278
Arsenite 37
Ascorbic acid 182, 213, 259
Asparaginase 196
Asparagine 118
Aspartate aminotransferase 143
Aspartic acid 118
B
1, 3 bisphosphoglycerate 28
2,3-bisphosphoglycerate 33
B6 deficiency 225
Basal metabolic rate 250
Base pairing rule 161
Beer’s law 334
Benedict-Roth basal metabolism apparatus 250
Benedict’s test 14, 20
Beneficial mutations
Benzene 61, 278
Beta hydroxybutyric 90
Beta-pleated sheet structure 131
Bial’s test 14
Bicarbonate buffer 290
Bile 79
Bile salts 79
Bilirubin 320, 324
Biliverdin 320
Biliverdin reductase 320
Biochemical function, vit C 213
Inositol 239
vit A 201
vitamin E 208
vitamin K 210
Biogenic amines
Biological value 257
Biotin 182, 230
Bis phosphoglycerate mutase 32
Bitot’s spots 203
Blood glucose level 55
Branching enzyme 49
Buffer capacit
Butyric acid 63
Buffers 288
C
11-cis-retinal 199
Calbindin 206
Calcitonin 241
Calcitriol 206
Calcium 53, 267
Calmodulin 53, 267, 305
Calories 248
Calorific value 249
Calorimetry 248
Carboxylation reaction 39
Carboxypeptidases 140
Cardiac muscle 3, 209, 248
Cardiolipin 69
Carnitine 84
Carnosine 152
Catalase 5, 244
Cathepsins 4
Causes, biotin deficiency 231
Cobalamin deficiency 236
Folate deficiency 288
Niacin deficiency 222
Pantothenic acid deficiency 233
Pyridoxine deficiency 225
Thiamine deficiency 216
Vitamin A deficiency 203
Vitamin D deficiency 208
Vitamin E deficiency 210
Vitamin K deficiency 212
Cell 1
Cellobiose 19
Cellulose 21
Central dogma of molecular genetics 166
Cephalin 68
Ceramide 71
Chargaff’s rule 161
Chitin 21
Cholecalciferol 203
Cholesterol 72, 110
Cholesterol esterase 78
Cholestipol 114
Chondroitin sulphate 23
Chromatin 3, 269
Chromatography 332
Chromoproteins 125
Chromosomes 3
Chronic alcoholism 216
Chronic glomerulonephritis 318
Chylomicrons 81, 106
Chylothorax 82
Chymotrypsin 140
Chymotrypsinogen 140
Cirrhosis 318
Citrate 36
Citrate synthase 36
Citric acid cycle 35
Citrulline 147
Classification, amino acids 116
Carbohydrates 7
Enzymes 170
proteins 124
Clearance tests 328
Clinical enzymology 195
Clover leaf, tRNA structure 163
Cobalamin 234
Coeliac disease 83
Coenzymes 182
Cofactors 182
Collagen 213, 307
Collagen helix 309
Colorimeter 335
Colorimetry 333
Compartmentalisation 188
Competitive inhibition 183
Conjugated proteins 124
Conjugation, bilirubin 279
Conjugation with glutamine 280
Conjugation with glycine 279
Copper 246
Cori’s cycle 33
Cori’s disease 56
Corrin ring 233
Cortisol 113
Covalent bond 128
Covalent modification 51, 190
Creatine 151
Creatinine 295, 318, 327
Creatinine Clearance test 329
Cyclic AMP 51, 264
Cyclic GMP 257
Cysteine 117
Cystine 128
Cytoplasm, Cytosol 5
Cytomembranes 3
Cytosine 156
Cytokeleton 5
cAMP 51
D
1, 25-dihydroxycholecalciferol 206
Deamination 144
Debranching enzyme 50
Dementia 223
Denaturation 135
Deoxyadenosylcobalamin 234
Deoxy sugars 16
Deoxyribose 16
Derived amino acids 116
Derived proteins 124
Dermatan sulphate 22
Dermatitis 222
Dextran 21
Dextrin 20
DHU arm, tRNA 164
Diabetes insipidus 272, 282
Diabetes mellitus 58
Diacyl glycerol (DAG) 77
Diastereoisomers 11
Dicumarol 184, 211
Dietary fiber 254
Digestion, carbohydrates 24
Dihydrolipoyl dehydrogenase 34
Dihydrolipoyl transacetylase 34
Dihydroxyacetone 8
Di-isopropyl fluorophosphate 185
D-isomer 11
Diphosphatidylglycerol 69
Disorders, urea cycle 150
Disulfide bridges 128
DNA 160
Dolichol 74
Dopamine 275
Dry beriberi 217
Dyslipidemias 109
E
Oedema 261
Ehlers-Danlos syndrome 310
Eicosa polyenoic fatty acid 65
Eicosanoids 65
Elastase 140
Elastin 311
Elaidic acid 65
Electron transport chain 3
Electrophoretic 104, 333
Emil Fischer 175
Emulsion 75
Enantiomers 11
Enediol 14
Endocytosis 141
Endoplasmic reticulum (ER) 3
Enolase 30
Enoyl reductase 95
Enterokinase 139
Enzyme activity 180, 188
Enzyme concentration 178
Enzyme inhibition 183
Enzyme kinetics 183, 185
Enzyme substrate complex 174
Enzyme, therapeutic agents 195
Epimerism 11
Epinephrine 51
Epoxides 67
Ergocalciferol 74
Ergosterol 74
Erythrose 8
Estrogen 113
Essentail fatty acids 65
Estradiol 73
Ethereal sulphate 280
Eukaryotic cell 1
Excitatory neurotransmitter 272
Excretion, ammonium ions 297
H+ 297
titratable acid 295
Exocytosis 4, 76
Extracellular fluid 281
F
FAD 182
FAD-dependent enzymes 182, 219
FAD-linked dehydrogenases 219
Fats 62
Fat soluble vitamins 197
Fatty acids 62
Fatty acid synthase 94
Fatty liver 59
Feedback inhibition 187
Ferritin 245
Ferroxidase 245
Fibre 23
Fibronectin 311
Flame photometry 336
Fluoride 30
Fluoroacetate 37
Fluorosis 247
5-Fluorouracil 186
FMN 182
FMN-dependent enzymes 182
Folate antagonists 228
Folic acid 226
FSH 271
Forbe’s disease 56
Free energy
Free fatty acid (FFA) 109
Fucose 16
Fructose 10
Fructose –1, 6 – bisphosphate 28, 43
Fumarase 36
Furfural 13
G
Galactitol 16
Galactokinase deficiency
Galactosamine 16
Galactose 9
Gamma carboxy glutamic acid 116
Gamma carboxylation 211
Gamma glutamyl cycle 141
Gangliosides 71
Gastric atrophy 237
Gemfibrozil 114
Genes 166
Genome 165
Globoside 71
Globular proteins 128
Globulins 125
Glossitis 219
Glucagon 57, 101
Glucocorticoids 101
Glucokinase 29, 31
Gluconeogenesis 41, 57
Gluconic acid 15
Glucosamine 16
Glucose 9
Glucose alanine cycle 45
Glucose-6- phosphatase 43, 50
Glucose – 6- phosphatase 54
Glucose-6- phosphate 29
Glucose-6 phosphate
dehydrogenase 40
Glucuronic acid 16
Glucuronidase 321
GLUT2 26
Glutamate dehydrogenase 145
Glutamic acid 118
Glutaminase 146
Glutamine 118
Glutathione 123, 151, 152
Glyceraldehyde 8
Glycerol 17
Glyceraldehyde-3-PO4 dehydrogenase 30
Glycine 117
Glycogen 20
Glycogen phosphorylase 50
Glycogen storage diseases 55
Glycogen synthase 47, 54
Glycogenesis 45
Glycogenin 48
Glycogenolysis 49
Glycolipids 62, 70
Glycolysis 27, 5, 289
Glycoproteins 23
Glycosaminoglycans 21
Glycosidic bond 17
Glycosides 17
Glycosphingolipids 70
Glycosuira 59
Glycosyl transferase 3
Goblet cells 3
Golgi apparatus 3
Gout 154, 186, 318
Growth hormone 101
Guanine 155
H
Hartnup’s disease 141
HDL 105
Heme 320
Heme oxygenase 320
Hemiacetal 11
Haemicellulose 255
Haemochromatosis 248
Haemoglobin 135
Haemolytic jaundice 322
Haemosiderosis 248
Haemorrhage 215, 318
Henderson-Hasselbalch equation 287
Heparan sulfate 23
Heparin 23
Hepatocellular jaundice 322
Hers’ disease 56
Heteropolysaccharides 21
Hexokinase 28, 31
Hexose monophosphate shunt 40
Hippuric acid 279
Histamine 152
Histidine 116
HMG CoA 90
HMG CoA reductase 111
HMG CoA synthase 90
Homeostasis, serum calcium 243
Homopolysaccharides 19
Hormones 262
Hyaluronic acid 23
Hydrolysis, biotransformation 277
Hydrocarbons 62, 277
Hydrophobic bonds 128
Hydroxy amino acids 116
Hydroxylysine 116
Hydroxy proline 116
Hyperammonaemia 150
Hyperbillirubinaemia 321
Hypercalcaemia 242
Hypercholesterolemia 112
Hypercholremia 283
Hyperkalemia 284
Hypernatremia 284
Hypertriglyceridemia 110
Hypervitaminosis A 203
Hypervitaminosis D 208
Hypervitaminosis K 212
Hypocalcaemia 242
Hypochloraemia 283
Hypokalemia 284
Hypoventilation 294, 300
Hypoxanthine 156, 186
I
Iduronic acid 16
Imino acid 116
Indole group 277, 280
Inducer 32, 192
Induction 192
Infantile beriberi 217
Inhibition 183
Inhibitor, xanthine oxidase 183, 186
Inositol triphosphate 239
Insulin 57, 102
Intermediate filaments 5
Intrinsic factor of Castle 235
Inulin 21
Invert sugar 19
Invertase 19
Iodine number 66
Iodoacetate 30
Isocitrate 37
Isoelectric pH (pI) 122
Isoelectric point 112
Isoelectric precipitation 122
Isoenzymes 193
Isoleucine 117
Isomaltose 18
Isomerases 173
Isomerism 7
Isoniazid (INH) 280
J
Jaundice 321
K
Keratan sulphate 23
Kerasin 70
Keratomalacia 203
Ketoacidosis 59, 90
Ketone bodies 90
Ketosis 92
Ketoses 7
Km 179
Koshland’s induced fit theory 175
Kreb’s cycle 35
Kwashiorkor 260
L
Lactose 18
Lactase 24
Lactate dehydrogenase 30
Lactic acidosis 33
Lactose intolerance 27
Lambert’s law 334
Laminin 311
Lauric acid 63
LDH 30
LDL 105
LDL-cholesterol 107
Lecithin 68
Leucine 117
Leutinizing hormone (LH) 271
Ligandin 321
Lignin 255
Ligases 173
Lignoceric acid 63
Limiting amino acid 258
Lingual lipase 77
Linoleic acid 64
Linolenic acid 64
Lipase 77
Lipid estrase 78
Lipoprotein lipase 106
Lipoproteins 62, 103, 125
Liposomes 75
Lipoxins (Lx) 65
L – isomer 11
Liver function test 320
Lohmann’s reaction 305
Lovastatin 114
Lyases 172
Lysine 118
Lysosomes 4
Lysyl oxidase 310
Lysolecithin 69
M
Macrocytic anemia 229, 237
Magnesium (Mg++) 29, 216, 246
Maintenance, nitrogen balance 256
Malaria 322
Malate 36
Malate dehydrogenase 36
Malic enzyme 40, 90, 221
Maltase 24
Maltose 17
Manganese (Mn) 246
Mannose 10
Mannitol 16
Marasmus 260
McArdle’s disease 56
Mechanism, HCI secretion 283
Mechanisms, regulation, pH 289
Megaloblastic anemia 237
Meprobromate 278
Mercapturic acid 279
Messenger RNA 163
Metabolic acidosis 300
Metabolic alkalosis 300
Metalloproteins 125
Methionine 117
Methotrexate 184, 228
Methyl B12 234
Methyl cobalamin 234
Methyl malonic aciduria
Methyl malonyl CoA isomerase 46
Mevalonate 111
Mevastatin 114
Micelle 74
Microfiilament 5
Miester cycle 141
Mitochondria 2
Molisch’s test 14
Mutarotation 13
Myofibril 301
Myoglobin 135
Myosin 302
Myristic acid 63
N
N10-formyl-THFA 228
N5, N10-methylene – THFA 228
N5-formyl-THFA 228
N5-Methyl-THFA 228
N-acetyl glutamate 147
N-acetyl glucosamine 16
N-acetyl neuraminic acid (NANA) 17, 71
NAD+ 221
NAD+ dependent dehydrogenase 221
NADPH 40, 93
Net protein utilization 257
Neurotrasmitters 272
Niacin 220
Niacin deficiency 222
Nicotinamide adenine dinuclotide 220
Nitrogen balance 256
Non-competitive inhibiton 185
Non-oxidative deamination 144
Non-polar amino acids 120
Norepinephrine 213, 275
Nucleolus 2
Nucleoproteins 125
Nucleoside 156
Nucleoside monophosphates 158
Nucleosomes 161
Nucleotide 158
Nucleus 1, 2
Nutritional importance, carbohydrates 253
lipids 254
proteins 255
Nyctalopia 203
O
Obesity 261
Obstructive jaundice 322
Oils 66
Oligopeptide 123
Oligosaccharides 17
Omega 3
fatty acids 64
Optical isomerism 10
Optical activity 10
Optical density (OD) 335
Ornithine 147
Ornithine transcarbamoylase 147
Osazone formation 14
Osmotic pressure 285
Osteogenesis imperfecta 310
Osteoarthritis 310
Osteomalacia 208
Osteoporosis 208
Oxaloacetate 35
Oxalosuccinate 36
Oxidation 277
Oxidative deamination 145
Oxidative decarboxylation 33
Oxidoreductases 170
Oxynervon 70
Oxytocin 271
P
Palmitic acid 64
Palmitoleic acid 64
Pancreatic juice 24
Pancreatic lipase 78
Pantothenic acid 232
Paper chromatography 322
Para aminobenzoic acid 185
Parathyroid hormone 263
Parkinson’s disease 276
Partition coefficient 322
Pellagra 222
Pentose phosphate pathway 40
Pepsin 139
Peptide bond 122, 128
Peptide bond formation 122
Peroxisomes 4, 90
pH 266
Phenyl alanine 117
Phenylketonuria 280
Pheochromocytoma 276
Phrynoderma 65
Phophsphorylation, enzyme 52, 101
Phosphate buffer 290
Phosphatidic acid 67
Phosphatase 32, 101, 265
Phosphatidyl ethanolamine 67
Phosphatidylglycerol 67
Phosphatidylserine 67
Phosphatidylinositol 68
Phospho adenosine phospho-sulphate (PAPS) 280
Phosphodiester bonds 159
Phosphodiesterase 52, 265
Phosphoglycerate 28, 31
Phosphoenol pyruvate carboxy kinase 42
Phophofructokinase 29, 31
Phosphoglucomutase 46, 50
Phosphogluconate 40
Phospholipases 78
Phosphogluconolactone 40
Phospholipase-C 267
Phospholipids 62, 67
Phosphoproteins 125
Phosphoprotein phosphatase 52
Phosphorus 243
Phosphotriose isomerase 30
Physiological role, thiamine 215
Plasma membrane 2
Plamalogens 69
Poly-A tail 163
Polyisoprenoids 198
Polyribosomes 165
Polysaccharides 19
Polysomes 165
Polyunsaturated fatty acid (PUFA) 65
Pompe’s disease 56
Porphyrins 151
Pregnenolone 113
Probucol 114
Progesterone 73, 113
Prokaryotic cell 1
Prolactin 271
Proline 118
Propionyl CoA 46
Prostate cancer 316
Proteases 138, 269, 311
Proteoglycans 314
Protein buffer system 290
Protein efficiency ratio 257
Protein kinase 52
Protein energy malnutrition 260
Proximal convoluted tubules 295
Pseudouridine arm 164
Pteridine 185
Pteroyl glutamic acid 226
Purine bases 151, 155
Putrescine 186
Pyrimidines 151, 155
Pyruvate carboxylase 42
Pyruvate dehydrogenase complex 34
Pyruvate kinase 30, 31
Q
Quarter staggered alignment 310
Quaternary structure of protein 134
R
Rancidity 66
Rapaport-Leubering cycle 31
Reabsorption, bicarbonate 295
Recombination DNA technology 167
Receptor 262
Recommended dietary allowance (RDA) 248
Renal function tests 326
Renal regulation, pH 293
Renal rickets 208
Renal threshold 58
Replication 166
Requirement, B6 225
biotin 230
folic acid 228
pantothenic acid 233
vitamin D 208
vit C 212
Respiratory acidosis 301
Respiratory distress syndrome 69
Respiratory quotient 249
Restriction endonucelases 196
Retinal 198
Retinal isomerase 202
Retinoids 198
Retinol 198
Retinol binding protein 200
Retinol palmitate 200
Rf value 332
Rheumatoid arthritis 307
Rhodopsin 201, 202
Rhodonase 280
Riboflavin deficiency 219
Ribitol 17
Riboflavin (vitamin B2) 218
Ribonucle otides 162
Ribose 8
Ribosomal RNA 164
Ribozymes 169
Ribulose 9
Rickets 208
RNA 162
DNA polymerase 166
S
S-adenosyl methionie 152
Saponification number 66
Sarcolemma 301
Sarcomere 301
Second messenger 69
Secondary lysosome 4
Secondary structure of proteins 130
Sedoheptulose 10
Selenium (Se) 247
Selenocysteine 118
Seliwanoff’s test 14
Semi-conservative replication 166
Semi-essential amino acids 120
Serine 116, 151
Serotonin 153
Sialic acid 17
Sickle cell anaemia 115, 168
Signal transduction 69
Simple proteins 124
Sitosterol 74, 114
Sorbitol 16
Sources, biotin 230
pantothenic acid 232
vitamin K 210
Specific dynamic action 251
Specificity, enzymes 176
Spermidine 153
Spermine 153
Sphingo phospholipids 69
Sphingomyelin 69
Sphinogosine 69
Stationary phase 332
Stearic acid 63
Stercobilinogen 321
Stereoisomers 7
Steroids 71
Stereo specificity 177
Steroid hormones 73
Streptokinase 195
Structural proteins 126
Substrate level phosphorylation 29
Succinate 36
Succiny CoA 36
Succus entericus 139
Sucrose 19
Suicide inhibition 186
Sulfatides 70
Sulphur containing amino acids 116
T
Tangier’s disease 110
Tarui’s disease 56
Taurine 79
Tertiary structure of protein 134
Testosterone 73, 113
Tetrahydro folic acid 226
Thiamine (vitamin B1) 215
Thiamine deficiency 216
Thiamine pyrophosphate 215
Threonine 117
Thymidylic acid 158
Thymine 156
Thyroid hormones 151
Thyroxine 57, 101
Total iron binding capacity 245
Trace elements 246
Transamination 143
Transcobalamin 235
Transdeamination 143
Transfer RNA 163
Transferases 171
Transferrin 245
Transmittance 335
Transport, carbon dioxide 290
Translation 167
Triacylglycerols 65
Triple-stranded helix, collagen 307
Tropocollagen 310
Tropomysoin 303
Troponin 303
Trypsin 139
Trypsinogen 139
Tryptophan 117
U
Ubiquinone 74
Uracil 156
Urea cycle 146
Urea level, blood 150
Uric acid 156, 186, 318
Urobilinogen 321
Uronic acid 16
V
Valine 117
Van der Waals’ forces 128
Vitamin A 198
Vitamin B12 233
Vitamin B6 223
Vitamin D 73
Vitamin E 208
Vitamin K 210
Von Gierke’s disease 56
W
Wald’s visual cycle 202
Water 281
Waxes 62, 67
Wernicke-Korsakoff syndrome 217
Wet beriberi 217
X
Xanthine 186
Xanthine oxidase 186
Xenobiotics 277
Xerophthalmia 203
Xylose 8
Xylulose 9
Z
Zinc (Zn) 247
Zwitterions 122
Zymogens 190
×
Chapter Notes

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Cell Biology1

The cell is the structural and functional unit of life. The human body is composed of specialized tissues which in turn consist of vast clusters of cells. Two general types of cells are recognized in nature. They are prokaryotes and eukaryotes.
  • The word Prokaryote is derived from a Greek word (Pro – before; karyon – nucleus). They lack a well defined nucleus and possess simple structure. Present mainly in the bacteria, blue green algae and certain types of microorganisms.
  • The word Eukaryote is also derived from the Greek word (Eu – true ; karyon – nucleus). They possess a well defined nucleus and are more complex in their structure and function. Present in all higher organisms, (both plant and animal) as well as in fungi, protozoa, etc.
The differences between a prokaryotic and eukaryotic cell are given in Table 1.1.
 
EUKARYOTIC CELL
In humans, eukaryotic cells exist in a variety of sizes and shapes that allow adaptation to their special functions. Despite their diversity in function they have certain features in common. The nucleus is separated from the rest of the cell constituents by an envelope called the nuclear membrane and contains the DNA (Fig. 1.1).
  • The cell units are separated from their surroundings by a plasma membrane. The plasma membrane is 7–10 nm thick.
  • It is primarily composed of a lipid bilayer, in which is dispersed a considerable amount of protein. A small amount of carbohydrate is present in membranes as glycoproteins and glycolipids.
  • Both protein and lipid molecules have freedom of movement within the framework of the membrane which is made possible by the fluid nature of the bilayer.
    Table 1.1   Comparison between a prokaryotic and eukaryotic cell
    Characteristic
    Prokaryotic Cell
    Eukaryotic Cell
    1.
    Size
    Small (1–10 µm)
    Large (10–100 µm)
    2.
    Subcellular organelles
    Absent
    Distinct organelles present, e.g. nucleus, mitochondria, lysosomes
    3.
    Nucleus
    Not well defined
    Well defined nucleus surrounded by a membrane
    4.
    Cytoplasm
    Organelles and cytoskeleton absent
    Present
    5.
    Cell division
    Fission
    Mitosis
    2
    zoom view
    Fig. 1.1: Structure of an eukaryotic cell
  • Movement of proteins is maintained in a lateral direction. This important property of fluidity facilitates the conformational changes that occur in the protein molecules of the membrane during their functional activity.
  • The plasma membrane performs the following functions.
    • It holds the cells together and makes it a functional unit.
    • Serves as a selective barrier—permitting the entrance of essential nutrients into the cell.
    • Secretes the waste products and thus keeps out toxic materials.
    • Binds certain regulatory substances, particularly hormones in a location that is most advantageous to the performance of their function.
 
SUBCELLULAR ORGANELLES
The various subcellular organelles present in the cell include the following:
  1. Nucleus
  2. Mitochondria
  3. Endoplasmic reticulum
  4. Golgi apparatus
  5. Lysosomes
  6. Peroxisomes
  7. Cytosol and cytoskeleton
The subcellular organelles are also surrounded by membranes. A brief note on the structure and function of various subcellular organelles are mentioned.
 
Nucleus
It is the largest cellular organelle surrounded by a double layered membrane known as nuclear envelope. The ground material present in the nucleus is known as nucleoplasm. Each of the membranes is a typical bilayer composed of phospholipids and cholesterol. The outer membrane is usually covered with ribosomes and is continuous with the endoplasmic reticulum. At certain intervals the two nuclear membranes have 3nuclear pores with a diameter of about 90 nm. These pores permit the free passage of the products synthesized in the nucleus into the surrounding cytoplasm.
 
Nucleolus
Nucleus contains a dense body known as the nucleolus. This consists of that portion of DNA which codes for ribosomal RNA. The nucleolus is therefore rich in ribosomal RNA which enters the cytosol through the nuclear pores.
Function: Nucleus contains DNA, the repository of genetic information. Approximately 90% of the cells DNA is found concentrated in the organelle as part of structures called chromosomes.
  • Human cells contain the genetic information distributed among 46 such chromosomes.
  • Eukaryotic DNA is associated with basic proteins (histones) in the ratio of 1:1 to form nucleosomes. An assembly of nucleosomes constitutes the chromatin-fibres of the chromosomes.
  • The nucleoplasm is rich in enzymes such as DNA polymerases and RNA polymerases which are involved in the synthesis of DNA and RNA and also possess the enzymes for DNA repair.
 
Mitochondria
Are the second largest organelles in the cell measuring 0.5–1 µm in diameter and 1–10 µm in length. There are usually 1–1000 mitochondria per cell depending on the nature and function of the cell. They are composed of a double membrane system. The outer membrane is smooth and composed of a phospholipid and cholesterol rich bilayer with an equal amount of protein. The inner membrane is invaginated for forming shelves or cristae which extends into the matrix.
Function: Mitochondria are the site of respiration and concomitant production of ATP which is the energy currency of the cell.
  • ATP generated in the mitochondria is exported to all the parts of the cell to provide energy for cellular work, such as motility, active transport of nutrients and certain energy requiring metabolic reactions. Mitochondria are often termed power houses of the cell.
  • Their number and size may reflect the need for energy and the nature of metabolic activity occurring in the tissue. For example, in cardiac muscle, where metabolism is essentially aerobic, the mitochondria are large and numerous, whereas in skeletal muscle which can function anaerobically as well, the mitochondria are smaller and fewer.
  • The components of electron transport chain (ETC) and oxidative phosphorylation concerned with ATP production are buried in the inner mitochondrial membrane.
  • The matrix contains several enzymes concerned with catabolism of carbohydrates, lipids and amino acids. The matrix enzymes also participate in the synthesis of heme and urea.
  • Mitochondria also contain a certain amount of DNA and ribosomes and are capable of synthesizing some of its own proteins.
Eukaryotic cells possess an extensive network of internal membranes pervading the cytoplasm. They are termed the cytomembranes and are usually subdivided into endoplasmic reticulum and Golgi apparatus.
 
Endoplasmic Reticulum
Consists of a complicated array of vesicular spaces separated from the cytosol by a system of membrane (7nm). The endoplasmic 4reticulum is divided into rough and smooth types.
 
Rough Endoplasmic Reticulum (RER)
Is lined on the cytoplasmic surface with multitude particles called ribosomes. These are responsible for the rough appearance of this type of endoplasmic reticulum under the electron microscope. Cells that produce proteins for secretion or export, e.g., pancreatic acinar cells and intestinal goblet cells, are rich in membrane bound ribosomes.
Function: The rough endoplasmic reticulum is the site of protein synthesis.
 
Smooth Endoplasmic Reticulum (SER)
Is in continuation with the rough endoplasmic reticulum. It is distinguishable from the rough by the absence of ribosomes.
Function:
  • Mainly concerned with the synthesis of lipids.
  • It is also the location of glycosyl transferases involved in the synthesis of glycoproteins and glycolipids.
  • It is responsible for the detoxification of xenobiotics.
 
Golgi Apparatus
Appear as flattened sacs or vesicles and are continuous with the endoplasmic reticulum. They function in modifying and sorting out the proteins.
  • The newly synthesized proteins are transported and temporarily stored in the Golgi apparatus (e.g., zymogen granules found in the pancreatic acinar cells prior to the release of proteins from the cells).
  • Secretory proteins as well as proteins of lysosomes and plasma membrane are synthesized on the membrane bound polyribosomes. They are then transported to the Golgi apparatus where they are suitably modified and sent to appropriate destinations.
  • Secretory proteins are enveloped in vesicles. Secretion involves the fusion of the vesicles with the plasma membrane followed by discharge of the contents into the extracellular space. This process is called exocytosis.
  • In doing so they must successively pass through each of the following cytomembrane systems.
RER ♦ SER ♦ Golgi Apparatus ♦ Vesicles ♦ ECF
Function: Primarily concerned with the modification (sorting) and export of proteins.
 
Lysosomes
Are spherical vesicles enveloped by a single membrane (0.4–0.9 µm in diameter). They contain a variety of hydrolytic degradation enzymes and are regarded as the digestive tract of the cell. The enzymes attack the various substrates and are as follows:
Glycosidase
– Glycogen
Arylsulfatase
– Glycolipids
Lipase
– Lipids
Phospholipase
– Phospholipids
Cathepsins
– Proteins
Phosphatase
– Phosphorylated substrate
  • The lysosomes (primary lysosomes) fuse with membrane bound vesicles containing the substrates to be partially or wholly digested. The fused lysosome is called secondary lysosome.
  • Digestive products such as amino acids leave the secondary lysosome and enter the cytosol. When undigested or indigestible substances accumulate they are called residual bodies, e.g. the cells of the proximal tubule. 5
  • The pH of the lysosomal matrix is more acidic (pH < 5) than the cytosol (pH > 7) and this facilitates the degradation of different compounds.
  • The digestive enzymes of the cell are confined to the lysosomes in the best interest of the cell. Escape of these enzymes into the cytosol will destroy the functional macromolecules of the cell and result in many complications.
  • Occurrence of diseases such as arthritis and some of the muscular disorders have been partly attributed to the release of lysosomal enzymes.
Function: The lysosomal enzymes are responsible for maintaining the cellular compounds in a dynamic state by their degradation and recycling.
 
Peroxisomes
Are also known as microbodies and are spherical with a diameter of 0.8–1.5 µm. They are distinguishable by their content of catalase, an enzyme that degrades hydrogen peroxide (H2O2).
Function:
  • Catalase protects the cell from the toxic effects of H2O2 by converting it to H2O and O2.
    zoom view
  • Peroxisomes are also involved in the oxidation of long chain fatty acids (C>18 and synthesis of plasmalogens and glycolipids.
 
Cytosol
The extranuclear cell content that possesses both soluble and insoluble constituents is termed as cytosol. The cytosol makes up 70–75% of the cellular weight. Many proteins, enzymes, metabolic intermediates and inorganic salts are found in this gel like medium.
Function:
  • Important metabolic processes such as glycolysis, gluconeogenesis, HMP shunt pathway and fatty acid synthesis occur in the cytosol.
  • Recent studies indicate that cytoplasm contains a complex network of protein filaments spread throughout and constitutes the cytoskeleton. The cytoplasmic filaments are of three types, viz
    • Microfilaments
    • Actin filaments
    • Intermediate filaments.
The filaments are polymers of proteins which are responsible for the structure, shape, and intracellular movement of organelles and also provide support to the cell.