Practical Microbiology for MBBS Students Surinder Kumar
INDEX
Page numbers followed by f refer to figure and t refer to table.
A
Abdomen 126, 127
Acetone 24, 28, 29
Acid fast
bacilli 24, 36
numbers of 39t
organisms 25
smear 37
stain 24, 27
Acid fastness, cause of 25
Acid-alcohol decolorizer 26
Acidic protoplasm 23
Actinomyces 24
Aedes 124, 124f
aegypti 124
albopictus 124
vittatus 124
Aeromonas spp. 60
Agar media, types of 19
Agar-agar shreds 120
Agglutination tile, latex 115, 115f
Albert's stain 26, 26f, 27, 30
method of 29
Alcaligenes faecalis 60
Alcohol 24, 26, 29
Alkaline 102
Amastigote stage 108
Amoebiasis 88
classify 88
Amoebic liver abscess 88
Amphitrichous 14
Ancylostoma duodenale 86
Andrade's indicator 99
Anemia, causes of 86
Animal pathogenicity tests 90
Anopheles 124, 124f
Antibiotic sensitivity testing 122, 122f
method of 122
Anti-streptolysin o test 66
Ascaris lumbricoides 81, 84, 85, 105
infection of 85
Aspergillus flavus 109, 110
growth of 110f
Aspergillus fumigatus 109
growth of 109f
Aspergillus niger 109, 110
growth of 110f
Aspergillus spp., growth of 109
Autoclave 119
B
Bacillary dysentery, infection in 76
Bacillus 24
Bacteremia 68
Bacteria
identification of 45
in practical examination 45
in urine specimen 73
Bacterial culture 3, 44
identification 46
Bacterial exercise 3
Bacterial growth 48f, 58f, 59
Bacterial structure 14
Balantidium coli 88
Beta lactamase, production of 64
Bijou bottle 113, 113f
Bile stained eggs 84, 135
Biliary tract infection 68
Biochemical reactions 90
for bacteria 91
Blood
agar 1517, 17f, 18t, 46, 48, 49f, 50f, 92, 93f4, 96, 97f
golden pigment on 49f
culture bottle 94, 95f
Bone and joints tuberculosis 39
Brightfield microscope 6
Brownian movement 14
Burkholderia 61
cepacia 13
mallei 13, 61, 135
pseudomallei 13
C
Campylobacter spp. 13, 60
Candida albicans 31, 109, 110, 110f, 111, 111f
Candida spp., growth of 109, 109f
Candle jar 123, 123f
Capsule stain 27
Castaneda blood culture medium 95, 95f
Castaneda's method of culture 78
Cell wall 29
integrity 24, 29
structure 23, 28
Chiggers 128
Chocolate agar 15, 16, 93f
Chonoallantoic membrane 112, 112f
Chromobacterium violaceum 13
Chronic recurrent diarrhea 89
Citrate utilizatition test 100, 100f
Citrobacter 13
Clostridium 24
tetani 13
Clot culture, advantage of 78
Coagulase test 62
Coagulase-negative staphylococci 64
Coccobacilli 51f
Cold stain 37
Compound light microcopy 6, 7f, 10
Confirmatory tests 53f, 96
Conjunctival swab 34
Corynebacterium 24
diphtheria 16, 26,1 30, 31, 32t4, 33, 93, 94, 103, 103f
exotoxin 33
growth of 99, 99f
hofmannii 31
pseudodiphtheriticum 31
Counterimmunoelectrophoresis 116, 116f
Counterstain 23
Craigie's tube 120, 120f
Cryptococcus neoformans 111, 111f
causes 111
growth of 109, 109f
Cryptosporidium-a protozoan 25
Crystal violet 23
in gram stain 28
iodine 24
complex 24
Culex 125, 125f
Culicini culex 124
Culture media 15
with growth 91, 96
without growth 91
Culture tubes upright 5
Cutaneous infections 63
Cyclopidae, spp. of 129
Cyclops 128f
control of 129
Cysticercus bovis 86
Cysticercus cellulosae 86
Cysts 81, 83
D
Darkfield microscopy 6
Deep infections 63
Deoxycholate citrate agar 15, 16
Diarrheal diseases 72
Dick test 66
Dienes phenomenon 70
Dientamoeba fragilis 89
Diphtheria
antitoxin 36
diagnosis of 34
passive immunization of 36
prophylaxis of 36
tests in 34
treatment of 36
Diphyllobothrium latum infestation 129
Directly observed treatment strategy 43
Disposable items 92, 117
Durham's tube 99f, 100
Dye safranin 23
Dye-iodine complex 24
E
Ear swab 34
Echinococcus granulosus 104
Eggs, characteristics of 135
Eggs-bile stained 81
Eggs-nonbile stained 82
Electron microscopy 6
Elek's gel precipitation test 35
Embryophore, inner 83
Endocarditis, infective 68
Endospore stain 27
Enriched media 19
Entamoeba coli, cyst of 81
Entamoeba histolytica 81, 83, 84, 87, 105
cyst of 81, 83f, 105, 105f
Enteric fever, diagnosis of 78
Enterobacter 13
agglomerans 71
Enterobius vermicularis 81, 87
egg of 82, 83f, 106, 106f
Enterococcus 24
faecalis 68
Enzyme-linked immunosorbent assays 35
Epsilometer or e-test 123
Erythrogenic toxin 66
Erythromycin 36
Escherchia coli 13, 52, 54, 54f, 55t, 71, 74, 97
colonies of 97f
Shigella 100
Extraintestinal amoebiasis, diagnosis of 88
F
Face shields 4
Fastidious bacteria 16
Feces examination 3, 80
Female anopheles mosquito 107
Fertilized egg 81
Fixation of smear, advantages of 28
Flagella
stain 27
type of 14, 59
Flagellates 89
Flavobacterium menigosepticum 13
Flea 126, 126f, 127
Fluorescent microscopy 6
Focusing mechanism 8
Fuller's method 65
Fungal growth 91, 108
G
Gardnerella vaginalis 13
Gas production 99f
Gas-pak 120f
Germ tube 111, 111f
Giardia lamblia 81, 83, 84, 88, 89
cyst of 83f, 105, 105f
Giardiasis, treatment of 89
Glass slides, clean 27
Glass syringe 113, 113f
Glassware 92, 113
Glomerulonephritis, acute 67
Gloves 4
Glucose 100
broth 15, 95, 95f
fermenters 100
Glycogen mass 83
Graduated pipette 113, 114f
Gram stain 22, 23f, 27, 28, 44, 47f, 49f51f, 56, 96, 98
devised 28
interpretation of 23, 28
mechanism of 23, 28
procedure of 28
safranin in 28
Gram's iodine 23
Gram-negative
bacilli 50, 51, 51f4, 76, 79, 102, 102f, 134
bacteria 23, 24, 24t4, 28, 29
cell walls of 29t
cells 24, 29
coccobacilli 97, 133
intracellular diplococci 103, 103f
Gram-positive
bacilli 79, 133
bacteria 23, 24, 24t4, 28, 29
cell walls of 29t
cells 23, 24, 28
cocci 48, 53, 53f, 102, 102f, 133
Growth media, phases of 15, 18
H
Haemophilus influenzae 16
Hafnia 13
Hair 5
Hands 4
Hanging drop preparation 11, 12f, 44, 50f
examination 57f
Hard tick 127, 127f
common 127
Head 124, 126
Heart 33
Helicobacter pylori 13, 37, 70
Hemolysis, type of 68
Histoplasma capsulatum 111f
HIV immunochromatography assay 117, 117f
Hookworm 81, 86
egg of 82, 82f, 106, 106f
Hot air oven 119, 119f
Housefly 125, 125f
Human disease 127
Hydatid cyst 104, 104f
Hydrogen sulfide 102
Hymenolepis nana 81, 87
egg of 83f, 106, 106f
I
Immersion oil 7
Immunity, type of 41
Immunodiffusion test 35
Immunology 92, 115
In vitro test 35, 73
Indicator media 19
Indole test 70, 100, 100f
Intestinal flagellate 89
Intra-abdominal abscess 68
Intracutaneous test 35
advantage of 35
Intradermal test 35
Iodine 23
preparation 81, 84
Itch mite 128, 128f
K
Kauffmann-White scheme 77
of classification 77
Kidneys 33
Kirby-Bauer's
disk 122
method 122f
Klebocins 74
Klebsiella
classify 74
ozaenae 74
pneumoniae 13, 74
rhinoscleromatis 74
spp. 52, 55t4, 70, 71, 73, 74, 97, 97f
colonies of 54f
growth of 97
Klebs-Loeffler bacillus 30
Koch's phenomenon 41
L
Lactobacillus 24
Lactose 97f
fermenter 16, 51, 52, 54f, 97, 97f, 100
bacteria 74, 134
Lancefield technique 50
Large-Sachs group 76
Laryngeal swab 34
Light microscope, methods of 8
Light microscopy 6
Liquid broth 58f
Liquid culture medium 44
Liquid media 15
growth in 17t, 44
types of 15t, 18
Listeria monocytogenes 13, 14, 135
Loeffler's methylene blue 26
Loeffler's serum slope 15, 16, 19, 31, 93, 94f
Lophotrichous 14
Louse 126, 126f
Low power objective 9
Lowenstein-Jensen medium 94, 94f4, 99
Lysogenic conversion 33
M
MacConkey agar 1517, 18f4, 18t4, 19, 46, 51, 54f4, 56f4, 58f4, 59, 60, 93, 93f4, 97, 97f, 98, 98f
Macrophage 111f
Mannitol fermenter 100
Mansonia 124
Masks 4
Maxted's method 65
McCartney bottle 115, 115f
Mcintosh-Filde's jar 120
Media, differential 19
Media-MacConkey agar 19
Medical entomology 92, 124
Medically flat bottle 115, 115f
Metachromatic granules 30
Methylene blue counterstain 26
Micrococcus 65t
Microcyclops karvei 129
Microfilaria 136
bancrofti 108, 108f
Microscope
parts of 6
resolution power of 10
Microscopic slides 91
Microtiter plate 115, 115f
Miliary tuberculosis 39
Mites 128
Moistoning 4
Monotrichous 14
Morganella morganii 13
Morganella spp. 70
Mosquitoes 124, 126
Motile
bacilli 47f, 51f, 54f
bacteria 13, 13t
gram-negative bacilli 134
without flagella 14
Motility 14
demonstration of 13
of organisms 12
type of 14
Much's granules 37
Multidrug resistant tuberculosis 43
Mycobacteria 26
acid-fast 37
atypical 99
Mycobacterium 24, 37
avium-intracellulare 37
bovis 25, 37, 40t
leprae 25, 37, 103
tuberculosis 19, 25, 37, 40, 40t, 99
growth of 99
Mycology 91, 108
N
Nasal swab 34
Necator americanus 86
Needlestick injuries, prevent 4
Negri bodies 113, 113f
Neisseria 16
gonorrhoeae 60, 103
meningitidis 60, 103
Nervous system 33
Nichrome wire loop 121, 121f
Nocardia asteroides 25
Nocardia brasiliensis 25
Non-bile stained eggs 135
Non-lactose fermenter 46, 55, 56f, 98f
Nonlactose fermenter
bacilli 135
colonies, growth of 98
Nonlactose fermenting 16
Nonmotile
bacilli 54f
bacteria 13, 13t
cocci 49f
gram-negative
baceria 134
bacilli 57f
Nucleus 108
Nuisance mosquitoes 125
Nutrient agar 1517, 17f, 18t, 46, 46f, 48f, 90, 93f, 98, 98f
uses of 17
Nutrient broth 15
O
Oil immersion
lens 10
objective 9, 10
Optical system 6
Ornithine decarboxylase 51
Oxidase test 60
methods of 59
P
Paranasal granuloma 110
Parasites
adult 91
infecting
brain 136
intestines 136
liver 136
lungs 136
lymphatic system 136
Parasitological exercise 3
Parasitology 90, 91, 104
Park Williams 8’ strain 32
Pasteur pipette 114, 114f
Pediculosis 126
Pediculus capitis 126
Pediculus corporis 126
Penicillin resistance, types of 64
Peptidoglycan, smaller amount of 24
Peptone water 15, 95, 96f
Petri dish 114, 114f
Phase-contrast microscopy 6
Phenylalanine deaminase test 101, 101f
Phenylpyruvic acid 69
Phlebotomus argentipes 126
Phthirus pubis 126
Plasmodium falciparum 107, 107f
gametocytes of 107, 107f
Plasmodium vivax 107, 107f
gametocytes of 107, 107f
stages of 107
Plesiomonas shigelloides 60
Pnemocococcus 16, 62
Polymerase chain reaction 35
Potassium tellurite blood agar 31, 99, 99f
Practical exercises in microbiology 21
Preisz-Nocard bacillus 36
Presterilized disposable
container 117, 117f
swab 118, 118f
syringe 118, 118f
Protective eyewear 4
Proteus
mirabilis 70
spp 13, 50, 53, 53f, 70, 71, 96
growth of 50f, 97f
strains of 70
vulgaris 70
Protoplasm 23, 28
Providencia spp. 70, 71
Providencia strains 70
Providencia stuartii 13
Pseudomonas 61
aeruginosa 13, 46, 46f4, 47, 59, 60, 98, 98f
reactions for 47t
Pulmonary
aspergillosis 110
tuberculosis 38
R
Radial immunodiffusion 116
Resistant-tuberculosis 43
Respiratory infections 66
Rheumatic fever 67
acute 67
Rhinosporidiosis 112f
Rhinosporidium seeberi 112
Robertson cooked meat broth 94, 94f
Roundworm 81, 104, 104f
egg of 81f, 82f, 105, 105f
S
Sabouraud's dextrose agar 108, 108f4, 109, 109f, 110f
Safranine counterstain 23
Saline preparation 81
Salmonella spp. 13
Salmonella 46, 57, 77 57t, 98f
causing gastroenteritis 79
reactions of 58t
Typhi 79
Sandfly 125, 125f, 126
Schick test 35
Schultz Charlton reaction 66
Seitz filter 121, 121f
Selective media 19
Sereny test 72
Serology 115
Serratia spp. 13
Shigella dysenteriae type 1 62
Shigella shigae 76
Shigella spp. 13, 46, 56, 57, 57t, 59t, 75, 135
Shigellosis, treatment of 76
Skin
infections 66
surfaces 4
swab 34
Smear 22
for staining 22
preparation 27
Smooth lactose fermenter 54f
Soft tick, common 128
Solid agar media 15
Solid media 17
agar, advantages of 18
growth on 18, 18t
types of 16t
Somatic cells 108
Stable toxin, action of 72
Staining exercises 22
Staphylococcal diseases 63
Staphylococcus 62, 65t
aureus 24, 31, 48, 49, 61, 63, 64, 78
growth of 49f, 96, 96f
isolates 62
strains 62
epidermidis 64
saprophyticus 64
spp. 48
Stegomyia 124
Stenotrophomonas 61
maltophilia 61
Sterile cotton swab 121, 122f
Sterilize inoculating loops 5
Stoke's method 122
Stool
examination 3, 80, 80f
preparation 80f
specimen, wet preparation of 91, 105
Streptococcal infections, treatment of 67
Streptococcus 24, 62
agalactiae 67, 68
albus 65
moniliformis 13
pneumoniae 24, 65
pyogenes 49, 65, 67, 96
growth of 49f, 96f
spp. 64
Sugar
fermentation 99
tests 100f
iron agar, triple 101, 102f
Sulfuric acid 25, 103
Swarming of proteus 70
T
Tab vaccine 79
Taenia saginata 84, 86
Taenia solium 84, 86
Taenia spp. 85
egg of 82, 82f, 106, 106f
Tapeworm 104, 104f
infection 86
Tellurite blood agar 31
Thayer martin medium 15, 16
Thicker peptidoglycan cell wall 24
Thorax 124, 126
Throat swab 34
Ticks 127
soft 127, 127f
Tiger mosquitoes 124
Tissue
culture bottle 122, 122f
culture test 35
diphtheria toxin 33
infections, soft 66
Toxic shock syndrome toxin 63
Toxicity in diphtheria, cause of 33
Toxin 66
mediated diseases 63
production 30
iron for 33
type A 63
Traveler's diarrhea 72
Treponema pallidum 116
Trichomonas vaginalis 89
Trichuris trichiura 84, 85
egg of 82, 82f, 105, 105f
Trombiculid mite 128, 128f
Trophozoites 84
True motility 14
Tuberculin syringe 114, 114f
Tuberculin test 41, 42
positive 42
reactions of 42
Tuberculosis
diagnosis of 39
prophylaxis of 42
treatment of 43
Typhoid fever 78, 79
U
Unfertilized egg 81
Universal container 115f
Universal precautions 4
Urea hydrolysis 69
Urease test 101, 101f
interpretation of 101
Urinary tract infection 68, 73
diagnosis of 73
V
Vaccinia viruses 112
Vaginal swab 34
Variola viruses 112
Vibrio cholerae 13, 14, 60
Violet dye 22
Viridans streptococci 69
Virology 91, 112
Virulence tests 30
Visceral larva migrans 85
Vulvar waist 104
W
Washing of hands 5
Water flea 128
Weil and felix reaction 70
West's postnasal swab 123
White coat 4
Widal test 79
Wound infection 68
Y
Yeast cells 111f
Yersinia enterocolitica 13, 70, 135
Z
Ziehl-Neelsen stain 3, 24, 36, 25f, 103f
1Zinc reagents 25
×
Chapter Notes

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1Basic Principles of Practical Microbiology
OUTLINE
  • Introduction
  • Microscopy
  • Commonly used procedures in Practical Microbiology
  • Culture Media2

IntroductionCHAPTER 1

Theory and practical examinations in microbiology are two components of examination for M.B.B.S. (2nd Prof.) examination. Practical examination in Microbiology may include the following exercises:
  1. Spots
  2. Staining
  3. Identification of bacterial culture
  4. Stool/Feces examination
    1. Spots: Five different spots with fixed time in the form of specimens-‘slides, glassware,’ media, etc. are kept for identification with related questions with spots to answer in one or two sentences.
    2. Staining (Bacterial exercise): Two smears are provided for staining, i.e. one for Ziehl-Neelsen (ZN) staining and other for Albert's staining. Gram stain is done from bacterial growth for identification on a culture plate.
    3. Identification of bacterial culture (Bacterial exercise): Bacterial growth is provided for identification on a culture plate as well as in liquid medium.
    4. Stool/Feces examination (Parasitological exercise): Feces specimen is given for parasitological exercise and for isolation and identification of two pathogenic findings, i.e. cysts/ova.
Table 1 shows specimen copy of Practical question paper of Microbiology for M.B.B.S. (2nd Prof.) examination. Practical exercises may be modified as per requirement of various institutions/universities.
Table 1   Microbiology Practical Examination M.B.B.S. 2nd Professional (Specimen copy)
Total Marks: 25
Question 1. Identify the spots displayed.                                          7(2×2+3×1)
Question 2. (a) Stain smear “A” by Ziehl Neelson technique. Draw and comment on this smear and show your findings to the examiner.                                                            (3)
(b) Stain smear “B” by Albert's technique. Draw and comment on this smear and show your findings to the examiner.                                                            (2)
Question 3. You have been provided with a pure bacterial culture on plate and in broth. Do Gram's staining from plate and hanging drop preparation for motility from broth. Comment on the growth and mention other tests needed to identify this bacterium. Show your findings to the examiner.                                                          9(3+3+3)
Question 4. Identify and draw two abnormal findings (ova and cysts) in the given specimen of feces. Show your findings to the examiner.                                                           4(2+2)
4  
UNIVERSAL PRECAUTIONS
The following procedures should be used by all health care workers, including students, whose activities involve contact with patients or with blood or other body fluids. These procedures were developed to minimize the risk of transmitting human immunodeficiency virus (HIV) or acquired immunodeficiency syndrome (AIDS) in a health care environment, but adherence to these guidelines will minimize the transmission of all nosocomial infections.
  1. Gloves should be worn when touching blood and body fluids, mucous membranes, and nonintact skin and when handling items or surfaces soiled with blood or body fluids. Gloves should be changed after contact with each patient.
  2. Hands and other skin surfaces should be washed immediately and thoroughly if contaminated with blood or other body fluids. Hands should be washed immediately after gloves are removed.
  3. Masks and protective eyewear or face shields should be worn during procedures that are likely to generate droplets of blood or other body fluids.
  4. Gowns or aprons should be worn during procedures that are likely to generate splashes of blood or other body fluids.
  5. To prevent needlestick injuries, needles should not be recapped, purposely bent or broken, or otherwise manipulated by hand. After disposable syringes and needles, scalpel blades, and other sharp items are used, they should be placed in puncture-resistant containers for disposal.
  6. Although saliva has not been implicated in human immunodeficiency virus (HIV) transmission, mouthpieces, resuscitation bags, and other ventilation devices should be available for use in areas in which the need for resuscitation is predictable. Emergency mouth-to-mouth resuscitation should be minimized.
  7. Health care workers who have exudative lesions or weeping dermatitis should refrain from all direct patient care and from handling patient-care equipment.
  8. Pregnant health care workers are not known to have a greater risk of contracting HIV infection than health care workers who are not pregnant; however, if a health care worker develops HIV infection during pregnancy, the infant is at risk of infection. Because of this risk, Pregnant health care workers should be especially familiar with, and strictly adhere to, precautions to minimize the risk of HIV transmission.
 
LABORATORY INSTRUCTIONS TO THE STUDENTS
The student should develop the habit of handling all cultures in the correct and safe manner. It is better to regard them all as potentially infective (See Universal precautions in general).
  1. White coat: Always wear a buttoned white coat or gown to prevent contamination of your cloths.
  2. Working place: Always keep the working space on the bench clear and do not keep books or papers and other material there.
  3. Moistoning- Do not moiston labels, pencil, etc. with tongue.
  4. Fingers and hands: While working in the laboratory, keep your fingers and hands away from your eyes, nose and mouth.
  5. Disinfection or discard of personal article: Any personal article which falls on the floor on other contaminated surface should be disinfected thoroughly or discard.
  6. Report all cuts, pricks and abrasions, howsoever slight, to your teacher or instructor.
  7. Do not remove cultures from the laboratory.5
  8. Culture tubes upright: Culture tubes must be kept upright in the racks or containers and are not to be laid on the bench. Cotton wool plugs should be held in hand without touching the part that goes inside the test tube. They should not laid on the bench.
  9. Stoppering: Tubes and bottles should be kept stoppered except when actually in use. The tip of the tube or bottle should be flamed immediately before and after use.
  10. Sterilize inoculating loops: Inoculating loops should be thoroughly sterilized by heating until the wire is red hot before and after use. Never put it down before sterilization.
  11. Disinfection: Put used slides, and pipettes in jars containing disinfectants.
  12. Microscope:
    1. Take care of your microscope after use. Clean all lenses of the microscope with the lens paper or clean cloth provided. The oil immersion lens should be cleaned with a little xylol.
    2. Wipe off all water or other material from the stage and other metal parts.
  13. All used slides, etc. to be put in the bucket provided and not in the sinks. Papers, etc. to be put in the bucket provided and not in the sinks.
  14. Spilling or splashing: If there is spilling or splashing of infective material, immediately report to one of the laboratory staff.
  15. Hair: All lady students must have their hair pinned up or inside the lab coat.
  16. Washing of hands: Always wash your hands with soap and water after completing your work and before leaving the laboratory.
  17. Cultures plates: Cultures plates to be kept closed when not in use.
 
KEY POINTS TO REMEMBER
  1. Practical examination in Microbiology for M.B.B.S. (2nd Prof.) examination may include the following exercises: Spots; Staining; Identification of bacterial culture; Stool/Faeces examination.
  2. Read universal precautions for Microbiological practicals.
  3. Follow the practical instructions while working in microbiology laboratory.